Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

   /home/labs/bioservices/services/miniconda2/envs/utap/bin/Rscript -e "rmarkdown::render('report.Rmd')" --verbose

      5. The output file is: 10_reports/report_output_XXXXXXXX_XXXXXX/report.html

Navigate into the SECOND folder of the script (of the analysis with counts correction):
cd 10_reports/report_umi_counts_output_XXXXXXXX_XXXXXX

  1. Change the report.Rmd script.
  2. Run the command:
    PATH=$PATH:/home/labs/bioservices/services/miniconda2/envs/utap/bin
    /home/labs/bioservices/services/miniconda2/envs/utap/bin/Rscript -e "rmarkdown::render('report.Rmd')" --verbose
  3. The output file is: 10_reports/report_umi_counts_output_XXXXXXXX_XXXXXX

...