Pipeline to perform DESeq2 analysis from a matrix containing raw counts of genes for replicated samples per at least two conditions .
Pipeline website: http://utap.wexac.weizmann.ac.il
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Choose your counts matrix file using 'Input folder' and click on run DESeq in order to identify differentially expressed genes with the DESeq2 package as described in the DESeq2 manual.
All of the samples from the counts matrix file will be parsed to the popup "choice box" .
Fill in you desired report folder name in the relevant field.
When choosing to run DESeq DESeq2 (with the 'Deseq run' By default), at least two categories must be created (by filling in the category names and dragging the relevant samples). Additional explanations can be found in the page-
UTAP: Transcriptome (RNA -seq and MARS-seq
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) pipelines guidelines
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List of links
Transcriptome pipeline for Weizmann Institute users: http://utap.wexac.weizmann.ac.il
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