Analyzing sequencing data via UTAP requires it to be placed in the Collaboration directory of a laboratory having an account on WEXAC (Weizmann Institute’s EXAscale) Cluster.
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Traverse to your lab's Collaboration folder on WEXAC using cd (change directory), for example -
/home/labs/<lab username>/Collaboration
Best practice is to create a new folder for your data using mkdir (make directory), for example -
mkdir <meaningFullName>
Traverse into the newly created directory -
cd <meaningFullName>
Since the data that is analyzed in UTAP are fastq files, please paste the link detailed in your email -
wget -nH --cut-dirs=1 -r --reject='index.html*' --exclude-directories=/fastq/<runID>/RawData --no-parent --no-check-certificate https://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/ (where shortcut-userID consists of the 2 first letters of userID)
The data will most likely be compressed in gz format so you will need to extract it before analyzing with UTAP -
gunzip <filename.gz>
Proceed to analyze the data using the UTAP pipeline