Collection of Tools:
ONT - NANOPORE APPLICATION TOOLS
[vitalyg@cn100 ~]$ module load python/bio-2.7.13
[vitalyg@cn100 ~]$ python
Python 2.7.13 (default, May 14 2017, 14:06:55)
[GCC 4.8.5 20150623 (Red Hat 4.8.5-11)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import wub
>>> help(wub)
>>> Help on package wub:
NAME
wub - # -*- coding: utf-8 -*-
FILE
/apps/RH7U2/gnu/python/bio-2.7.13/lib/python2.7/site-packages/Wub-0.2.0-py2.7.egg/wub/__init__.py
PACKAGE CONTENTS
bam (package)
mappers (package)
parsers (package)
read_stats (package)
simulate (package)
tests (package)
util (package)
vis (package)
wrappers (package)
DATA
__author__ = 'ONT Applications Group'
__email__ = 'Apps@nanoporetech.com'
__version__ = '0.2.0'
Spades
SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. http://spades.bioinf.spbau.ru/release3.9.0/manual.html
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