Pipeline website:http https://ngsbioutap.wexac.weizmann.ac.il/
The CHIP-seq (Chromatin Immunoprecipitation followed by Sequencing) pipeline facilitates the analysis of CHIP-seq data in order to identify genome-wide DNA binding sites for transcription factors and other proteins. The pipeline receives single or paired-end reads as input (the type of input is automatically determined by the number of fastq files generated per sample), performs quality control and pre-processing steps, and maps the reads onto mouse or human genomes. Peak analysis is then performed (after some post-processing), on the identified DNA binding fragments, and significant peaks (as compared to a control background if present) are selected and analyzed.
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