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In order to run a transcriptome analysis, your lab must have:
- An account on Wexac
- Sufficient free storage space (> 400Gb)
- A "Collaboration" folder within your lab folder, with read and write permissions for the LSCF (Life Science Core Facility) Bioinformatics Unit
Requirements 1 and 2 can be set up by your department secretary or administrator. Requirement 3 must be set up by the computing center (contact hpc@weizmann.ac.il).
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3) Demultiplexing from BCL files
4) ATAC-Seq
5) ChIP-Seq
6) Single-cell RNA Cell Ranger
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List of links
Transcriptome pipeline for Weizmann Institute users: http://utap.wexac.weizmann.ac.il
Demo of the UTAP interface (for internal and external users): http://utap-demo.weizmann.ac.il
Acknowledgments
Citation:
Kohen et al. BMC Bioinformatics (2019) 20:154 https://doi.org/10.1186/s12859-019-2728-2 (PMID: 30909881)
Bioinformatics support staff for UTAP:
- UTAP development and maintenance team: utap@weizmann.ac.il
- Dena Leshkowitz
- Ester Feldmesser
- Gil Stelzer
- Bareket Dassa
- Noa Wigoda