16.2.22 NGS Support
Illumina sequencer run setup services (NGS-pipeline) and UTAP
The bioinformatics unit provides services for processing NGS data from a wide variety of applications, divided into main processes as follows:
NGS run setup and services (NGS-pipeline) that assist with retrieving raw fastq or demultiplexed files, and provide quality control measures for each sample that was sequenced. The services include:
Base-calling of the sequences: creating fastq files
Samples demultiplex
- Quality control of the fastq files
2. Web server: User-friendly Transcriptome Analysis Pipeline (UTAP) - Click to go to our UTAP site
a. Analysis setup after sequencing completes
b. Analysis pipeline steps and reports
3. Command line: User-friendly Transcriptome Analysis Pipeline (UTAP) - work in progress - currently not available
Acknowledgments
Citation:
Kohen et al. BMC Bioinformatics (2019) 20:154 https://doi.org/10.1186/s12859-019-2728-2 (PMID: 30909881)
Bioinformatics support staff for:
Technical problems with NGS run set up:
Michal Twik michal.twik@weizmann.ac.il
Utilizing UTAP:
UTAP team (UTAP maintenance) utap@weizmann.ac.il
NGS analysis support:
- Dena Leshkowitz
- Ester Feldmesser
- Gil Stelzer
- Bareket Dassa
- Noa Wigoda