16.2.22 Getting your sequencing data (done)

Owned by Jordana Lindner
Last updated: 12 Mar, 2023 by Gil Stelzer
1 min read

You can access and download sequencing data via WGET on UNIX (see detailed command below), or from your web browser.


WGET on UNIX (WEXAC cluster or other Linux):

Execute the following command for downloading the FASTQ files:

wget -nH --cut-dirs=1 -r --reject='index.html*' --exclude-directories=/fastq/<runID>/RawData --no-parent --no-check-certificate https://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/

(where shortcut-userID consists of the 2 first letters of userID).


Execute the following command for downloading the RAW DATA files - wget -nH --cut-dirs=1 -r --reject='index.html*' --no-parent --no-check-certificate https://stefan.weizmann.ac.il/raw/<runID>/


From the browser:

Download the FASTQ files from https://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/

Download the RAW DATA files from https://stefan.weizmann.ac.il/raw/<runID>/


You can update your password on susanc at https://susanc3.weizmann.ac.il/bin/prefer 


For questions, contact:

Bioinformatics team: biopipe@weizmann.ac.il