Upon sequencing completion you will receive an email detailing two options for downloading your data.
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- Click the Owncloud link to download the Fastq files.
- Click the Aspera link in the provided email (you will be prompted to install a client software and a browser extension).
- Copy and paste one of the following URL's to your browser
- Fastq files - https://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/
- Raw Data files - https://stefan.weizmann.ac.il/raw/<runID>/
Command line-based download options
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Once you reach the folder in which you wish to place your date, use one of the following commands -
- Fastq files - wget -nH --cut-dirs=1 -r --reject='index.html*' --exclude-directories=/fastq/<runID>/RawData --no-parent --no-check-certificate https://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/ (where shortcut-userID consists of the 2 first letters of userID)
- Raw Data files - wget -nH --cut-dirs=1 -r --reject='index.html*' --no-parent --no-check-certificate https://stefan.weizmann.ac.il/raw/<runID>/
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You can update your password on susanc at https://susanc3.weizmann.ac.il/bin/prefer
For questions, contact:
Bioinformatics team: biopipe@weizmann.ac.il