You can access and download NextSeq data via WGET on UNIX (see detailed command below), or from your web browser.
WGET on UNIX (WEXAC cluster or other Linux):
Execute the following command for downloading the FASTQ files:
wget -nH --cut-dirs=1 -r --reject='index.html*' --exclude-directories=/fastq/<runID>/RawData --no-parent --no-check-certificate http://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/
(where shortcut-userID consists of the 2 first letters of userID).
Execute the following command for downloading the RAW DATA files - wget -nH --cut-dirs=1 -r --reject=index.html* --no-parent --no-check-certificate http://stefan.weizmann.ac.il/raw/<runID>/
From the browser:
Download the FASTQ files from http://stefan.weizmann.ac.il/users/<shortcut-userID>/<userID>/<runID>/
Download the RAW DATA files from http://stefan.weizmann.ac.il/raw/<runID>/
You can update your password on susanc at http://susanc.weizmann.ac.il/blims/prefer
For questions, contact:
Bioinformatics team: biopipe@weizmann.ac.il