Genomic Regions Enrichment Analysis

ChIP-Atlas WEB tool  http://chip-atlas.org/enrichment_analysis

GREAT  WEB tool http://great.stanford.edu/public/html/

LOLA  R package see article https://academic.oup.com/bioinformatics/article/32/4/587/1743969

    Web application http://lolaweb.databio.org/