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16.2.22 NGS Support
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16.2.22 To start an NGS project
16.2.22 Illumina sequencer run setup at the LSCF
16.2.22 Downloading data upon sequencing completion
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Transferring sequencing data to WEXAC for analysis via UTAP
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16.2.22 UTAP for external (non-Weizmann Institute of Science) users - (under construction)
16.2.22 UTAP requirements & description (Weizmann users)
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16.2.22 UTAP: Transcriptome from RNA-Seq, MARS-Seq or SCRB-Seq
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16.2.22 UTAP: SCRB-Seq analysis pipeline
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16.2.22 UTAP: DESeq2 from counts matrix
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16.2.22 UTAP: ATAC-Seq pipeline guidelines
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16.2.22 UTAP: ChIP-seq pipeline guidelines - (almost done: JL please add comments from NGS meeting)
16.2.22 UTAP: Ribo-Seq Pipeline
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16.2.22 UTAP: Cell Ranger pipeline for single cell mRNA (scRNA) gene expression (GEX)
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16.2.22 UTAP: Demultiplexing from BCL pipeline guidelines
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16.2.22 UTAP: Demultiplexing from RUNID pipeline guidelines - (initial construction done: MT/JL please fill in the gaps)
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16.2.22 UTAP: FAQ - (done)
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16.2.22 UTAP version history
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12.12.23 UTAP: how to render the report.Rmd file to PDF
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10.9.24 UTAP2 Administrative interface
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WEXAC mount
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Archive files from Wexac to storWis
Enrichment Analysis
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Kickoff Template
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Nanopore
Old NGS/UTAP documentation
Pages to check and archive if not needed
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Subscription support for Units
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How to Create an External Userid
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Element AVITI demultiplexing
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16.2.22 NGS Support
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